Detailed information of SNP:
|
SNP ID:
sf0327572688(Gbrowse)
Chromosome: chr03 Position: 27572688 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1251 | 81.29% | 18.71% |
| All Indica | 631 | 75.91% | 24.09% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 226 | 96.46% | 3.54% |
| Indica II | 212 | 48.11% | 51.89% |
| Indica Intermediate | 193 | 82.38% | 17.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327572688 | C->T | INTERGENIC | None |