Detailed information of SNP:
|
SNP ID:
sf0327573197(Gbrowse)
Chromosome: chr03 Position: 27573197 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1245 | 60.00% | 40.00% |
| All Indica | 626 | 25.40% | 74.60% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 223 | 6.73% | 93.27% |
| Indica II | 211 | 54.50% | 45.50% |
| Indica Intermediate | 192 | 15.10% | 84.90% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327573197 | C->A | INTERGENIC | None |