Detailed information of SNP:



SNP ID: sf0327573197(Gbrowse)

Chromosome: chr03

Position: 27573197
Major allele: C

Minor allele: A

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of A(minor allele)
All1245 60.00% 40.00%
All Indica626 25.40% 74.60%
All Japonica497 96.78% 3.22%
Aus67 98.51% 1.49%
Indica I223 6.73% 93.27%
Indica II211 54.50% 45.50%
Indica Intermediate192 15.10% 84.90%
Temperate Japonica335 97.01% 2.99%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 91.18% 8.82%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 65.85% 34.15%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0327573197 C->A INTERGENIC None