Detailed information of SNP:
|
SNP ID:
sf0327677140(Gbrowse)
Chromosome: chr03 Position: 27677140 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1327 | 96.16% | 3.84% |
| All Indica | 708 | 92.94% | 7.06% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 292 | 87.33% | 12.67% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 204 | 93.63% | 6.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327677140 | C->T | INTERGENIC | None |