Detailed information of SNP:
|
SNP ID:
sf0327679713(Gbrowse)
Chromosome: chr03 Position: 27679713 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 52.12% | 47.88% |
| All Indica | 798 | 81.58% | 18.42% |
| All Japonica | 496 | 0.60% | 99.40% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 212 | 74.53% | 25.47% |
| Indica Intermediate | 211 | 70.14% | 29.86% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327679713 | A->G | INTERGENIC | None |