Detailed information of SNP:
|
SNP ID:
sf0327683082(Gbrowse)
Chromosome: chr03 Position: 27683082 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 55.95% | 44.05% |
| All Indica | 799 | 33.04% | 66.96% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 7.73% | 92.27% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 211 | 36.49% | 63.51% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327683082 | G->A | INTERGENIC | None |