Detailed information of SNP:
|
SNP ID:
sf0327740267(Gbrowse)
Chromosome: chr03 Position: 27740267 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 59.77% | 40.23% |
| All Indica | 798 | 93.61% | 6.39% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 93.58% | 6.42% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327740267 | T->C | LOC_Os03g48674(LOC_Os03g48674.1) | Non-Synonymous SNP |