Detailed information of SNP:
|
SNP ID:
sf0327756441(Gbrowse)
Chromosome: chr03 Position: 27756441 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 60.08% | 39.92% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327756441 | G->C | LOC_Os03g48710(LOC_Os03g48710.1) | INTRON |
| sf0327756441 | G->C | LOC_Os03g48710(LOC_Os03g48710.2) | INTRON |
| sf0327756441 | G->C | LOC_Os03g48710(LOC_Os03g48710.3) | INTRON |
| sf0327756441 | G->C | LOC_Os03g48710(LOC_Os03g48710.4) | INTRON |