Detailed information of SNP:
SNP ID:
sf0327780406(Gbrowse)
Chromosome: chr03 Position: 27780406 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1392 | 93.61% | 6.39% |
All Indica | 775 | 89.03% | 10.97% |
All Japonica | 496 | 100.00% | 0.00% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 189 | 60.32% | 39.68% |
Indica Intermediate | 211 | 95.26% | 4.74% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 67 | 100.00% | 0.00% |
Group VI/Aromatic | 13 | 92.31% | 7.69% |
Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0327780406 | G->T | INTERGENIC | None |