Detailed information of SNP:
|
SNP ID:
sf0327787935(Gbrowse)
Chromosome: chr03 Position: 27787935 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1246 | 82.66% | 17.34% |
| All Indica | 629 | 67.09% | 32.91% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 299 | 82.27% | 17.73% |
| Indica II | 165 | 31.52% | 68.48% |
| Indica Intermediate | 165 | 75.15% | 24.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327787935 | A->G | INTERGENIC | None |