Detailed information of SNP:
|
SNP ID:
sf0327803607(Gbrowse)
Chromosome: chr03 Position: 27803607 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 66.62% | 33.38% |
| All Indica | 796 | 50.38% | 49.62% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 65 | 12.31% | 87.69% |
| Indica I | 373 | 54.69% | 45.31% |
| Indica II | 212 | 60.38% | 39.62% |
| Indica Intermediate | 211 | 32.70% | 67.30% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327803607 | G->A | INTERGENIC | None |