Detailed information of SNP:
|
SNP ID:
sf0327866444(Gbrowse)
Chromosome: chr03 Position: 27866444 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1153 | 80.05% | 19.95% |
| All Indica | 541 | 71.16% | 28.84% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 259 | 74.13% | 25.87% |
| Indica II | 164 | 76.22% | 23.78% |
| Indica Intermediate | 118 | 57.63% | 42.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 67.57% | 32.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327866444 | C->T | INTERGENIC | None |