Detailed information of SNP:
|
SNP ID:
sf0327907646(Gbrowse)
Chromosome: chr03 Position: 27907646 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1389 | 96.69% | 3.31% |
| All Indica | 781 | 97.31% | 2.69% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 56 | 60.71% | 39.29% |
| Indica I | 372 | 98.92% | 1.08% |
| Indica II | 201 | 93.03% | 6.97% |
| Indica Intermediate | 208 | 98.56% | 1.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327907646 | C->G | LOC_Os03g49000(LOC_Os03g49000.1) | INTRON |