Detailed information of SNP:
|
SNP ID:
sf0327908085(Gbrowse)
Chromosome: chr03 Position: 27908085 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1315 | 96.43% | 3.57% |
| All Indica | 791 | 99.87% | 0.13% |
| All Japonica | 402 | 90.05% | 9.95% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 206 | 100.00% | 0.00% |
| Temperate Japonica | 259 | 88.03% | 11.97% |
| Tropical Japonica | 89 | 100.00% | 0.00% |
| Japonica Intermediate | 54 | 83.33% | 16.67% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327908085 | C->T | INTERGENIC | None |