Detailed information of SNP:
|
SNP ID:
sf0327919417(Gbrowse)
Chromosome: chr03 Position: 27919417 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 87.88% | 12.12% |
| All Indica | 799 | 83.35% | 16.65% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 46.01% | 53.99% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 92.54% | 7.46% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327919417 | A->C | LOC_Os03g49020(LOC_Os03g49020.1) | INTRON |