Detailed information of SNP:
|
SNP ID:
sf0327933801(Gbrowse)
Chromosome: chr03 Position: 27933801 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 55.87% | 44.13% |
| All Indica | 771 | 31.52% | 68.48% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 66 | 12.12% | 87.88% |
| Indica I | 355 | 20.28% | 79.72% |
| Indica II | 210 | 60.95% | 39.05% |
| Indica Intermediate | 206 | 20.87% | 79.13% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327933801 | T->C | INTERGENIC | None |