Detailed information of SNP:
|
SNP ID:
sf0327937395(Gbrowse)
Chromosome: chr03 Position: 27937395 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 81.25% | 18.75% |
| All Indica | 790 | 71.90% | 28.10% |
| All Japonica | 496 | 93.75% | 6.25% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 367 | 79.02% | 20.98% |
| Indica II | 213 | 43.19% | 56.81% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 335 | 91.94% | 8.06% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327937395 | T->A | LOC_Os03g49050(LOC_Os03g49050.1) | INTRON |