Detailed information of SNP:
|
SNP ID:
sf0327943476(Gbrowse)
Chromosome: chr03 Position: 27943476 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1215 | 79.26% | 20.74% |
| All Indica | 596 | 59.90% | 40.10% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 257 | 48.64% | 51.36% |
| Indica II | 186 | 80.11% | 19.89% |
| Indica Intermediate | 153 | 54.25% | 45.75% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327943476 | C->T | INTERGENIC | None |