Detailed information of SNP:
|
SNP ID:
sf0327944775(Gbrowse)
Chromosome: chr03 Position: 27944775 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 54.63% | 45.37% |
| All Indica | 777 | 29.34% | 70.66% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 361 | 13.57% | 86.43% |
| Indica II | 212 | 60.38% | 39.62% |
| Indica Intermediate | 204 | 25.00% | 75.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327944775 | C->T | LOC_Os03g49060(LOC_Os03g49060.1) | INTRON |