Detailed information of SNP:
|
SNP ID:
sf0327956890(Gbrowse)
Chromosome: chr03 Position: 27956890 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 63.30% | 36.70% |
| All Indica | 798 | 94.49% | 5.51% |
| All Japonica | 493 | 8.32% | 91.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 94.92% | 5.08% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 332 | 9.34% | 90.66% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327956890 | A->T | INTERGENIC | None |