Detailed information of SNP:
|
SNP ID:
sf0327959415(Gbrowse)
Chromosome: chr03 Position: 27959415 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 87.77% | 12.23% |
| All Indica | 799 | 83.35% | 16.65% |
| All Japonica | 496 | 94.76% | 5.24% |
| Aus | 63 | 95.24% | 4.76% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 45.54% | 54.46% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 92.24% | 7.76% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327959415 | T->C | LOC_Os03g49090(LOC_Os03g49090.1) | Synonymous |