Detailed information of SNP:
|
SNP ID:
sf0327960936(Gbrowse)
Chromosome: chr03 Position: 27960936 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 85.33% | 14.67% |
| All Indica | 798 | 79.70% | 20.30% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 212 | 44.34% | 55.66% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 91.94% | 8.06% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327960936 | A->G | INTERGENIC | None |