Detailed information of SNP:
|
SNP ID:
sf0327961509(Gbrowse)
Chromosome: chr03 Position: 27961509 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1253 | 93.93% | 6.07% |
| All Indica | 634 | 88.64% | 11.36% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 286 | 83.57% | 16.43% |
| Indica II | 186 | 96.77% | 3.23% |
| Indica Intermediate | 162 | 88.27% | 11.73% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327961509 | G->A | INTERGENIC | None |