Detailed information of SNP:



SNP ID: sf0327963203(Gbrowse)

Chromosome: chr03

Position: 27963203
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1412 91.29% 8.71%
All Indica792 85.35% 14.65%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I375 99.73% 0.27%
Indica II208 49.04% 50.96%
Indica Intermediate209 95.69% 4.31%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 85.71% 14.29%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0327963203 C->T LOC_Os03g49100(LOC_Os03g49100.1) Non-Synonymous SNP