Detailed information of SNP:
|
SNP ID:
sf0327972542(Gbrowse)
Chromosome: chr03 Position: 27972542 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 55.48% | 44.52% |
| All Indica | 782 | 29.80% | 70.20% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 56 | 14.29% | 85.71% |
| Indica I | 367 | 12.53% | 87.47% |
| Indica II | 210 | 62.86% | 37.14% |
| Indica Intermediate | 205 | 26.83% | 73.17% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327972542 | C->T | LOC_Os03g49120(LOC_Os03g49120.1) | Non-Synonymous SNP |