Detailed information of SNP:
SNP ID:
sf0327974277(Gbrowse)
Chromosome: chr03 Position: 27974277 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1278 | 75.74% | 24.26% |
All Indica | 665 | 55.04% | 44.96% |
All Japonica | 495 | 99.80% | 0.20% |
Aus | 66 | 96.97% | 3.03% |
Indica I | 285 | 41.75% | 58.25% |
Indica II | 200 | 80.50% | 19.50% |
Indica Intermediate | 180 | 47.78% | 52.22% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 92 | 98.91% | 1.09% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 38 | 78.95% | 21.05% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0327974277 | G->A | LOC_Os03g49120(LOC_Os03g49120.1) | Synonymous |