Detailed information of SNP:
|
SNP ID:
sf0327974290(Gbrowse)
Chromosome: chr03 Position: 27974290 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1245 | 79.92% | 20.08% |
| All Indica | 654 | 64.68% | 35.32% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 46 | 73.91% | 26.09% |
| Indica I | 289 | 54.33% | 45.67% |
| Indica II | 192 | 85.42% | 14.58% |
| Indica Intermediate | 173 | 58.96% | 41.04% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 34 | 82.35% | 17.65% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327974290 | C->A | LOC_Os03g49120(LOC_Os03g49120.1) | Non-Synonymous SNP |