Detailed information of SNP:
|
SNP ID:
sf0327990068(Gbrowse)
Chromosome: chr03 Position: 27990068 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 50.39% | 49.61% |
| All Indica | 799 | 78.60% | 21.40% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 44.13% | 55.87% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327990068 | C->T | INTERGENIC | None |