Detailed information of SNP:
|
SNP ID:
sf0327995813(Gbrowse)
Chromosome: chr03 Position: 27995813 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 50.14% | 49.86% |
| All Indica | 798 | 21.93% | 78.07% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 5.33% | 94.67% |
| Indica II | 213 | 58.69% | 41.31% |
| Indica Intermediate | 210 | 14.29% | 85.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327995813 | T->C | INTERGENIC | None |