Detailed information of SNP:
|
SNP ID:
sf0327999222(Gbrowse)
Chromosome: chr03 Position: 27999222 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 50.32% | 49.68% |
| All Indica | 799 | 22.03% | 77.97% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 5.60% | 94.40% |
| Indica II | 213 | 58.69% | 41.31% |
| Indica Intermediate | 211 | 14.22% | 85.78% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0327999222 | C->A | INTERGENIC | None |