Detailed information of SNP:
|
SNP ID:
sf0328050417(Gbrowse)
Chromosome: chr03 Position: 28050417 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 83.02% | 16.98% |
| All Indica | 799 | 78.72% | 21.28% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 49.76% | 50.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0328050417 | C->A | INTERGENIC | None |