Detailed information of SNP:
|
SNP ID:
sf0328051339(Gbrowse)
Chromosome: chr03 Position: 28051339 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 85.51% | 14.49% |
| All Indica | 797 | 81.30% | 18.70% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 24.62% | 75.38% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 212 | 80.66% | 19.34% |
| Indica Intermediate | 210 | 54.29% | 45.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0328051339 | C->T | INTERGENIC | None |