Detailed information of SNP:
|
SNP ID:
sf0328067857(Gbrowse)
Chromosome: chr03 Position: 28067857 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 98.51% | 1.49% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 491 | 95.93% | 4.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 96.07% | 3.93% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 90.91% | 9.09% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0328067857 | C->T | INTERGENIC | None |