Detailed information of SNP:



SNP ID: sf0328094490(Gbrowse)

Chromosome: chr03

Position: 28094490
Major allele: G

Minor allele: T

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1419 69.34% 30.66%
All Indica799 56.07% 43.93%
All Japonica497 99.40% 0.60%
Aus67 2.99% 97.01%
Indica I375 53.33% 46.67%
Indica II213 72.30% 27.70%
Indica Intermediate211 44.55% 55.45%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 97.87% 2.13%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 78.57% 21.43%
Intermediate42 69.05% 30.95%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0328094490 G->T INTERGENIC None