Detailed information of SNP:
|
SNP ID:
sf0328094490(Gbrowse)
Chromosome: chr03 Position: 28094490 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 69.34% | 30.66% |
| All Indica | 799 | 56.07% | 43.93% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 53.33% | 46.67% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 44.55% | 55.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0328094490 | G->T | INTERGENIC | None |