Detailed information of SNP:
|
SNP ID:
sf0328096078(Gbrowse)
Chromosome: chr03 Position: 28096078 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 70.31% | 29.69% |
| All Indica | 799 | 57.07% | 42.93% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 0.00% | 100.00% |
| Indica I | 375 | 53.60% | 46.40% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 211 | 45.50% | 54.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0328096078 | G->A | INTERGENIC | None |