Detailed information of SNP:
|
SNP ID:
sf0328109228(Gbrowse)
Chromosome: chr03 Position: 28109228 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1266 | 92.89% | 7.11% |
| All Indica | 649 | 97.53% | 2.47% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 362 | 100.00% | 0.00% |
| Indica II | 167 | 92.22% | 7.78% |
| Indica Intermediate | 120 | 97.50% | 2.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0328109228 | T->A | INTERGENIC | None |