Detailed information of SNP:
|
SNP ID:
sf0328186664(Gbrowse)
Chromosome: chr03 Position: 28186664 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1362 | 98.24% | 1.76% |
| All Indica | 743 | 96.90% | 3.10% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 99.73% | 0.27% |
| Indica II | 185 | 90.81% | 9.19% |
| Indica Intermediate | 192 | 97.40% | 2.60% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0328186664 | C->A | INTERGENIC | None |