Detailed information of SNP:
|
SNP ID:
sf0328195143(Gbrowse)
Chromosome: chr03 Position: 28195143 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 93.49% | 6.51% |
| All Indica | 773 | 93.27% | 6.73% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 59 | 42.37% | 57.63% |
| Indica I | 355 | 89.86% | 10.14% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 207 | 93.72% | 6.28% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0328195143 | A->T | LOC_Os03g49530(LOC_Os03g49530.1) | INTRON |