Detailed information of SNP:
|
SNP ID:
sf0328220758(Gbrowse)
Chromosome: chr03 Position: 28220758 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1341 | 96.94% | 3.06% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 421 | 90.74% | 9.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 288 | 89.93% | 10.07% |
| Tropical Japonica | 77 | 100.00% | 0.00% |
| Japonica Intermediate | 56 | 82.14% | 17.86% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0328220758 | T->G | INTERGENIC | None |