Detailed information of SNP:
|
SNP ID:
sf0328238537(Gbrowse)
Chromosome: chr03 Position: 28238537 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 61.52% | 38.48% |
| All Indica | 796 | 96.86% | 3.14% |
| All Japonica | 496 | 0.81% | 99.19% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 373 | 96.25% | 3.75% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0328238537 | C->T | INTERGENIC | None |