Detailed information of SNP:
|
SNP ID:
sf0328238555(Gbrowse)
Chromosome: chr03 Position: 28238555 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 56.05% | 43.95% |
| All Indica | 796 | 96.11% | 3.89% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 65 | 3.08% | 96.92% |
| Indica I | 373 | 96.25% | 3.75% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0328238555 | A->G | INTERGENIC | None |