Detailed information of SNP:
|
SNP ID:
sf0328317376(Gbrowse)
Chromosome: chr03 Position: 28317376 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 83.91% | 16.09% |
| All Indica | 799 | 85.98% | 14.02% |
| All Japonica | 484 | 76.86% | 23.14% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 73.07% | 26.93% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 322 | 65.84% | 34.16% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0328317376 | A->G | INTERGENIC | None |