Detailed information of SNP:



SNP ID: sf0328739492(Gbrowse)

Chromosome: chr03

Position: 28739492
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 83.16% 16.84%
All Indica799 80.60% 19.40%
All Japonica497 100.00% 0.00%
Aus67 0.00% 100.00%
Indica I375 100.00% 0.00%
Indica II213 41.31% 58.69%
Indica Intermediate211 85.78% 14.22%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 71.43% 28.57%
Intermediate42 69.05% 30.95%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0328739492 C->T INTERGENIC None