Detailed information of SNP:
|
SNP ID:
sf0328865992(Gbrowse)
Chromosome: chr03 Position: 28865992 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 81.18% | 18.82% |
| All Indica | 799 | 76.35% | 23.65% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 42.25% | 57.75% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0328865992 | C->A | LOC_Os03g50560(LOC_Os03g50560.1) | UTR_5_PRIME |
| sf0328865992 | C->A | LOC_Os03g50560(LOC_Os03g50560.2) | UTR_5_PRIME |