Detailed information of SNP:
|
SNP ID:
sf0328868031(Gbrowse)
Chromosome: chr03 Position: 28868031 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 86.18% | 13.82% |
| All Indica | 793 | 76.04% | 23.96% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 371 | 89.76% | 10.24% |
| Indica II | 212 | 47.64% | 52.36% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0328868031 | G->A | INTERGENIC | None |