Detailed information of SNP:
|
SNP ID:
sf0328912664(Gbrowse)
Chromosome: chr03 Position: 28912664 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1227 | 94.46% | 5.54% |
| All Indica | 613 | 99.51% | 0.49% |
| All Japonica | 497 | 88.93% | 11.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 336 | 99.70% | 0.30% |
| Indica II | 101 | 100.00% | 0.00% |
| Indica Intermediate | 176 | 98.86% | 1.14% |
| Temperate Japonica | 335 | 85.37% | 14.63% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 37 | 89.19% | 10.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0328912664 | T->A | INTERGENIC | None |