Detailed information of SNP:
|
SNP ID:
sf0328926848(Gbrowse)
Chromosome: chr03 Position: 28926848 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1361 | 94.78% | 5.22% |
| All Indica | 749 | 90.92% | 9.08% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 62 | 100.00% | 0.00% |
| Indica I | 365 | 94.79% | 5.21% |
| Indica II | 183 | 80.87% | 19.13% |
| Indica Intermediate | 201 | 93.03% | 6.97% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0328926848 | C->T | LOC_Os03g50670(LOC_Os03g50670.1) | INTRON |