Detailed information of SNP:
|
SNP ID:
sf0328940166(Gbrowse)
Chromosome: chr03 Position: 28940166 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 80.11% | 19.89% |
| All Indica | 798 | 74.44% | 25.56% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 213 | 41.78% | 58.22% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0328940166 | A->G | INTERGENIC | None |