Detailed information of SNP:
|
SNP ID:
sf0328978098(Gbrowse)
Chromosome: chr03 Position: 28978098 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1230 | 97.15% | 2.85% |
| All Indica | 722 | 99.72% | 0.28% |
| All Japonica | 388 | 93.04% | 6.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 328 | 100.00% | 0.00% |
| Indica II | 206 | 100.00% | 0.00% |
| Indica Intermediate | 188 | 98.94% | 1.06% |
| Temperate Japonica | 272 | 91.54% | 8.46% |
| Tropical Japonica | 67 | 100.00% | 0.00% |
| Japonica Intermediate | 49 | 91.84% | 8.16% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0328978098 | C->A | INTERGENIC | None |