Detailed information of SNP:



SNP ID: sf0329004448(Gbrowse)

Chromosome: chr03

Position: 29004448
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 88.72% 11.28%
All Indica799 80.98% 19.02%
All Japonica497 99.80% 0.20%
Aus66 100.00% 0.00%
Indica I375 98.93% 1.07%
Indica II213 44.60% 55.40%
Indica Intermediate211 85.78% 14.22%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 85.71% 14.29%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0329004448 C->T INTERGENIC None