Detailed information of SNP:
|
SNP ID:
sf0329007462(Gbrowse)
Chromosome: chr03 Position: 29007462 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 93.05% | 6.95% |
| All Indica | 786 | 99.36% | 0.64% |
| All Japonica | 487 | 83.57% | 16.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 99.46% | 0.54% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 98.55% | 1.45% |
| Temperate Japonica | 328 | 85.67% | 14.33% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 67 | 56.72% | 43.28% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0329007462 | C->A | INTERGENIC | None |